EBImage - Image processing and analysis toolbox for R
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Last updated 5 months ago
visualizationbioinformaticsimage-analysisimage-processing
70 stars 12.67 score 37 dependencies 29 dependentsRBioFormats - R interface to Bio-Formats
An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.
Last updated 5 months ago
dataimportbio-formatsbioconductorimage-processing
23 stars 7.51 score 40 dependencies 1 dependentsDEFormats - Differential gene expression data formats converter
Convert between different data formats used by differential gene expression analysis tools.
Last updated 5 months ago
immunooncologydifferentialexpressiongeneexpressionrnaseqsequencingtranscription
4 stars 6.74 score 72 dependencies 1 dependents